Protein Info for SOA0110 in Shewanella oneidensis MR-1

Annotation: lipoprotein, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1408 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF17963: Big_9" amino acids 131 to 216 (86 residues), 31.7 bits, see alignment 6.2e-11 amino acids 226 to 314 (89 residues), 55.4 bits, see alignment 2.4e-18 amino acids 420 to 499 (80 residues), 40.4 bits, see alignment 1.2e-13 amino acids 513 to 602 (90 residues), 40.4 bits, see alignment 1.1e-13 amino acids 611 to 700 (90 residues), 44.6 bits, see alignment 5.7e-15 amino acids 708 to 792 (85 residues), 30.7 bits, see alignment 1.3e-10 amino acids 814 to 891 (78 residues), 26.8 bits, see alignment 2e-09 PF17892: Cadherin_5" amino acids 226 to 315 (90 residues), 42.3 bits, see alignment 1.4e-14 amino acids 513 to 604 (92 residues), 31.4 bits, see alignment 3.6e-11 amino acids 611 to 702 (92 residues), 33.4 bits, see alignment 8e-12 PF17803: Cadherin_4" amino acids 415 to 476 (62 residues), 25.3 bits, see alignment (E = 4.3e-09)

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_A0110)

Predicted SEED Role

"Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E833 at UniProt or InterPro

Protein Sequence (1408 amino acids)

>SOA0110 lipoprotein, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MINKHYISSLIPAALLGFFLVGCSGESRNNFIDPDAARLVAHPQVFVLKQGETQRVDLTQ
SVVAKNVASWKIADLDDKTGLGTILNPQATYFDYQATQSGAGSFNYTVKGDNLTATSQIV
LAVNAGETPGNNIPVADNITLSTFNNVDAIIDLSAYITDADGDTLRINKLVSASNRFTLN
GFQVTFAPDGFVGVDQAVYSVDDGRGGYALAYIVVTSNDANPPAPNTAPVAKDDSLSMDV
AKQSVLNINLSGLISDADGDSLKVVTLYSHNDRAVLKENASVDYTPGNFRGVDQFTYLVS
DGKGGYDLGTVTVTVGDSTPPTPPTPSLVAYQQAFVLDVDQLQTIDVTQSVTSEHLDAWS
LTTVQDSTNLGVVSAKTATTFNYLAQTPGVAQIDYSVQGGSLSANSTITVAINAPVTPDN
HRPEAQDTQLETLNNASKTIDLQGKISDVDGDTLSITLHGSARFSLNGTQVTFTPNGFVG
LDQAVYSVEDGKGGYALANIVAISEDANPPVPNMAPTANDAQFTLDVAKNVTFNIDLVAQ
RLIADADGDALSIAHIYTANNRATKQGATGITYTPGAFRGVDQFTYVITDGKDGYAINAI
TVVVNDSTPANKIPTAGPVTAKMLHNDPAITISVNSAVSDADGDTLKIVSISGALGQASI
NPANALEMLYEPKGFVGTDRFVYVVSDDNGGYAMGEVTVTVTDSNPTAPVANTVQENTLL
DTPINIDLSAYISDKETETANLVISNVTNATSPAVATLSGQTVIYTPNGFTGNDILTYTV
TDGRHSTNGTIVISVNAHGAHAIQADNLEGGTEPNAPFIHDLSALISTTDPTAGELIVVN
AIGGALGTATVTNNILTYTPKLGVFGKDRLIYTVKDSHNPAHYTQGTISITIFAPAKPEI
TKLEAKKETDGYLKAYVTCRTCDVTQYKYAWIINGLTKSTGETYIPTAADDGFNIRLEVT
GQDAYGQVTEMQYVVYAFSKVETIFSDMYAFAALKTDGSVVTWGYSDYGGDSSSVAGQLT
SGVKVIDSTSSAFAAIKEDGSVVTWGDSPYGGDSSSVAGKLTSGVKVIYSNSSAFAAVKQ
DGSVVTWGSYGGDSSSVAGQLTSGVKVIYSTDSEFGAFAAVKEDGSVVTWGNSPYGGDSS
SVAGQLTSGVKVIYSTNNAFAAVKEDGSVVTWGDSGAGGDSSSVAGQLTSGVKVIYSTNN
AFAAVKEDGSVVTWGGYGGDSSSVAGQLTSGVKVIYSTNNAFAAVKEDGSVVTWGDSGNG
GDSSSVAGQLTSGVKVIDSTYSAFAAVKEDGSVVAWGNSGYGGDSSSVAGQLTSGVKVID
STTSAFAVVKEDGSVVTWGGSFYGGDSSSVAGQLTSGVKVIYSTSSAFAVVKEDGSVVTW
GGSFYGGDSSSVADKLAPNLFLIETSIN