Protein Info for SOA0088 in Shewanella oneidensis MR-1

Annotation: plasmid stabilization protein ParE, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 103 PF05016: ParE_toxin" amino acids 5 to 92 (88 residues), 59.7 bits, see alignment E=1.8e-20

Best Hits

Swiss-Prot: 30% identical to PARE4_CAUVC: Toxin ParE4 (parE4) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: None (inferred from 100% identity to son:SO_A0088)

Predicted SEED Role

"ParE toxin protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E846 at UniProt or InterPro

Protein Sequence (103 amino acids)

>SOA0088 plasmid stabilization protein ParE, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MAVTYHLTPDAQSDLIGIHRFTLAQWGATQSKTYLSGLKQTIQLLAETPTLGKNRPEVRM
NVFSFPYSSHVIYYIQHEHQFVVFGILHKSMVPLTHLAERETI