Protein Info for SO4754 in Shewanella oneidensis MR-1

Name: atpI
Annotation: ATP synthase protein I (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details PF03899: ATP-synt_I" amino acids 15 to 111 (97 residues), 66.1 bits, see alignment E=1.6e-22

Best Hits

Swiss-Prot: 46% identical to ATPZ_PSEAE: ATP synthase protein I (atpI) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K02116, ATP synthase protein I (inferred from 100% identity to son:SO_4754)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E8B3 at UniProt or InterPro

Protein Sequence (127 amino acids)

>SO4754 ATP synthase protein I (NCBI ptt file) (Shewanella oneidensis MR-1)
MSKVLARRGRWSAYKLVMMQAAVAGGASILFFVVWGVQFGYSALAGGSIAVLPNFVFATL
AFSHTGASSAAKVIKTFYWGEAVKLLLTIAMFSLVFINLKVAFMPLFVCYVLTLIVHWTA
PLYFKQS