Protein Info for SO4747 in Shewanella oneidensis MR-1

Name: atpD
Annotation: ATP synthase F1, beta subunit (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 TIGR01039: ATP synthase F1, beta subunit" amino acids 3 to 461 (459 residues), 855.6 bits, see alignment E=4.5e-262 PF02874: ATP-synt_ab_N" amino acids 6 to 75 (70 residues), 57.9 bits, see alignment E=1.2e-19 PF00006: ATP-synt_ab" amino acids 132 to 344 (213 residues), 242 bits, see alignment E=5.5e-76

Best Hits

Swiss-Prot: 100% identical to ATPB_SHEON: ATP synthase subunit beta (atpD) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K02112, F-type H+-transporting ATPase subunit beta [EC: 3.6.3.14] (inferred from 99% identity to she:Shewmr4_3925)

MetaCyc: 86% identical to ATP synthase F1 complex subunit beta (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"ATP synthase beta chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E8C0 at UniProt or InterPro

Protein Sequence (463 amino acids)

>SO4747 ATP synthase F1, beta subunit (NCBI ptt file) (Shewanella oneidensis MR-1)
MSTGTVVQVIGAVVDVEFPQDAVPQVYDALKITGEGSCNGLVLEVQQQLGGGVVRTIAMG
TSDGLRRGLEVVNSGSPISVPVGTATLGRIMNVLGDPIDEAGAIGEEERYVIHRAAPSYE
EQSNTTELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFA
GVGERTREGNDFYYEMKDSGVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDV
LLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSVQAVY
VPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDVA
NGVQTVLQRYKELKDIIAILGMDELSDDDKMTVSRARKIERFLSQPFHVAEVFTGSPGKY
VSLKDTIRGFKGILSGEFDHIPEQAFYMVGSIDEAVEKANKKK