Protein Info for SO4711 in Shewanella oneidensis MR-1

Annotation: HD domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 transmembrane" amino acids 156 to 175 (20 residues), see Phobius details PF11871: DUF3391" amino acids 10 to 125 (116 residues), 78 bits, see alignment E=1.5e-25 PF13487: HD_5" amino acids 148 to 310 (163 residues), 106.7 bits, see alignment E=1.7e-34 PF01966: HD" amino acids 158 to 279 (122 residues), 50.9 bits, see alignment E=2.8e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4711)

Predicted SEED Role

"HD-domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E8F4 at UniProt or InterPro

Protein Sequence (394 amino acids)

>SO4711 HD domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSESAESVDLIKLPVSKLTLGMFVSAIDKNDQGRLAIANAGQIKHKDAILKLTKNGIKYV
WVDTERSAEHCGFKRKVSNDSQVKKSIVTREKQQEQAQVILTEAKDLIRKVLSETFEGKA
IEVAPFEALADSMIESVLLDEDALKCMSALRTKDAYLLEHSVNVAFLLVTFGKYLKLDRS
MLREMAVGGILHDIGKIKVDNKVLHKPGKLTPEEFEHMKLHQVYALEIMSETKGLSQISK
DVCLMHHEKLDGRGYPRGLKGDEIPLHGRMSCIVDIFDALTATRCYKEAMSPAAAFKILL
SLTPFHLDQQLVYDFIRCIGVYPVGSLVELSDGRVGIVWASKDRDALHPIVKCFYSLKAK
RYTEVVIVDLLKSELHIERGVSPSSLDIDPTPFY