Protein Info for SO4705 in Shewanella oneidensis MR-1

Annotation: transcriptional regulator, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 PF01381: HTH_3" amino acids 11 to 72 (62 residues), 34.1 bits, see alignment E=4.6e-12 PF12268: DUF3612" amino acids 319 to 493 (175 residues), 362.3 bits, see alignment E=1e-112

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4705)

Predicted SEED Role

"Predicted transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E8F9 at UniProt or InterPro

Protein Sequence (503 amino acids)

>SO4705 transcriptional regulator, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MRKSHFLGTKIRNLRKRNNLTMEDLSARCIRVDASSAPSVSYLSMIERGKRVPSAEMLAV
IATVFQKDVDWFLDDVPEESAITPDKGRRGGISGMALEPSFLFSNDILQIAIPEMLSQTG
ISGRQFAHLLIRAHQEHHQNHFPDLERAAEEVGLKRMPLSLDEMLDIAKGVGLKIKWIDS
TPQEVIDERGVSSHQLVTSFFEPPSTIYINKMLKNRPSRLKYDLAAHIGHCVLHNKDGLK
SVMISGRKLQMDEEVTMQSNTLNAQDILHAWRDFESSFFAGALLCPKVPYRQLLDRHGYE
IEVHKQLQVSASVAMRRMTVVSPYPHWHYFDAYAPGKLKAVYRGNGIPLPWGNMRLVEDP
CQHWAVFRMISEPSVGTSAQISILNVGNEPRIYCCESIKVEDSAGNPHVLCAGIDLNPAI
EAQGKDALSIAHDLKAACVTGGGSVAIPKHIKSDLVSIAKILNINWIERGIKNDARLICS
RGAVCPRQPSCYQAGKSQCDGAE