Protein Info for SO4694 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR02001: conserved hypothetical protein" amino acids 1 to 245 (245 residues), 273.7 bits, see alignment E=7e-86 PF09694: Gcw_chp" amino acids 32 to 245 (214 residues), 82.5 bits, see alignment E=2.3e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4694)

Predicted SEED Role

"Conserved hypothetical protein 2001"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E8H0 at UniProt or InterPro

Protein Sequence (245 amino acids)

>SO4694 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKIRTKFLLTGALLSLAASSHAAEDNQLFGGTINGNVNFASDYVFRGESETLDGDIPVVQ
GKLSWDHNQGWYAGVFSSNIKFADPNLEIVTAPFIGKAGEFGDSGFTYDVMLFSYLYPGA
SYSNYTELWLKVGKQFGRANLQLEITPTVDDWFGVDGWHGVNYALHPSYSFDNGVKISAS
VGYQDLTGDGAEGWGHWNIGLSKAYYGLNFDLRYHASTVDSDHKVYGTQTEIFDDRVVIG
ISKSF