Protein Info for SO4658 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 PF04445: SAM_MT" amino acids 2 to 191 (190 residues), 333.9 bits, see alignment E=2.3e-104

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4658)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>SO4658 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MDFVTGAVAHRRKFGGGRGQSIAKAVGLKQGVTPKVVDGTAGLGRDAFVLASLGCTVTMV
ERHPVVAALLEDGLRRAYQDAEIGDWMRERMQLFHGSSLEALAKLEQGVDVVYLDPMYPH
RDKSALVKKEMRVFQTLVGADLDADGLLAPAMALASKRVVVKRPDYAEDLAGVKPSMVIE
TKKNRFDVYVKSAMK