Protein Info for SO4537 in Shewanella oneidensis MR-1

Annotation: peptidase, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07676: PD40" amino acids 89 to 114 (26 residues), 25.8 bits, see alignment (E = 2e-09) amino acids 270 to 292 (23 residues), 23.6 bits, see alignment (E = 9.9e-09) PF00326: Peptidase_S9" amino acids 468 to 671 (204 residues), 214.5 bits, see alignment E=3.1e-67

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4537)

Predicted SEED Role

"Peptidase S9, prolyl oligopeptidase active site region:Peptidase S9, prolyl oligopeptidase active site region precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E8W6 at UniProt or InterPro

Protein Sequence (675 amino acids)

>SO4537 peptidase, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MKKAGILLLSLLMPFSTAFAEASKPLSVELLWQLKRIGSPVVSSTGEHIIAPVTEYDLKE
DKGSTQLWRFDVEGKNNRAITAKGLKVSEPVFSPDGKTLAFISERNDDDAGQIYLLPMDG
PGEAAKLTDIPTGVNGIKWVGKHLYFISNIFPEQNWEQMKAQLKTDKDNKVSARQWNALP
YSQFDHWLDERRQAHVFRIPATGGTVEAVTQPLGHELPRSSQSSESYDISPDERLIAFSA
YGSDNRVDPKLDLFLATIGGNKAENITPENPAPDLNPSFSPNGKTLAFTRQKIPGFYADT
ARLMLLDVSSRKLTTLTPDWDRSVSEFEWTPDSKGFYASIEDAATNRIYHIDAKSGKAKA
ITQATDFSQPAIAKDGQLIATNQSFLYPARLVSINPRNGKTERLEQFNDDILKDVDLGTY
ESVTYKGYQGQDIQMWVHYPPGFDRSKKYPLFMLIHGGPHNAISDGFHYRWNAQTFASWG
YVTAWPNFHGSSGFGQDFADAINPDWKNKSLEDVLKATDWFKQQSWIDSDRMVAGGASYG
GYLTSIILGQPHPFKALLIHAAVYDMYAQMSADFAVHSTRFGNYWDNPELYKAISPHYFA
ANFNTPTLVSHGQLDYRVPVGQGFELFRTLQTRNVESRMIYFPDENHWIVKPNNSIYWYN
QVKDWMAHYAKPGAQ