Protein Info for SO4446 in Shewanella oneidensis MR-1
Annotation: molybdenum ABC transporter, ATP-binding protein (NCBI ptt file)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 100% identity to son:SO_4446)Predicted SEED Role
"Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)" in subsystem Molybdenum cofactor biosynthesis or Transport of Molybdenum (TC 3.A.1.8.1)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q8E947 at UniProt or InterPro
Protein Sequence (367 amino acids)
>SO4446 molybdenum ABC transporter, ATP-binding protein (NCBI ptt file) (Shewanella oneidensis MR-1) MAQIIADLHCQIQNHKHIKLSAEFSCKAGEVLAVVGPSGGGKTTLLRMIAGLNHPDAGSI VFGETPWFDNKSRTALTPQQRHIGYMPQHFGLFPNLTALENVVAGLDHIPKSARIARAKD WLDRVNLQGLPDRLPMHLSGGQRQRVALARALAREPSVLLLDEPFSAVDRETRERLYLEL ARLKEQLLCPVIMVTHDLNEALLLADSMILISQGQMLQQGVPFEVLSRPRNEAVARQMGL RNIFDGEVVFQDRTKDITWLKFGEQLIASDFGKDRSVGSNVRWVIPNQGIRFNAITNGRL CRSFNKLDITIDSLLVMGESVRVVCYVTGTKLLLNTEVSLHLAQKLGLTKGMQTTVALKS EQIHILE