Protein Info for SO4373 in Shewanella oneidensis MR-1

Annotation: glycosyl transferase, group 2 family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 594 transmembrane" amino acids 488 to 503 (16 residues), see Phobius details PF00535: Glycos_transf_2" amino acids 10 to 176 (167 residues), 67 bits, see alignment E=2e-22 PF03279: Lip_A_acyltrans" amino acids 350 to 563 (214 residues), 41.1 bits, see alignment E=1.3e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4373)

Predicted SEED Role

"FIG143263: Glycosyl transferase / Lysophospholipid acyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E9B1 at UniProt or InterPro

Protein Sequence (594 amino acids)

>SO4373 glycosyl transferase, group 2 family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MGPVPIKLALVIPNYNHSAAISQALSELAALNLPCYLIDDGSNDETRYLLQSLAEQHDWV
TLLQHPYNRGKGAAVMTGLRSAYRDGFTHALQVDADGQHNLSDIPAMLAKAQAKPDALIS
GKPEYDKSVPKGRLYGRYLTHFWVWVETLSFDIQDSMCGFRVYPLAATERLFSKQALTER
MDFDIEILVKLYWQGVEILFHPTKVIYPENGVSHFQCVADNVRISKLHTRLFFGMLKRLP
QLLRRKQAAKSTSSAHTATHWSAMKERGSYWGIKLLVESYRFGGHWLCRAIMYPVICYFF
LTGKVSREASRDFLRRVQHLEPQHPQLNQPVGWRDSLNHFIAFGNAALDRIDAWCDRIQL
SQVDFPDRQVLADQLESGKGAVLLVSHLGNLELCRAISIHQRKVKVNVMVLTSHAENFNN
VLKQLNPNSSLNLIQVTELNPATSMLLQQKIEDGELVVIAGDRTSSHAQGRVVYAPFMGQ
DAAFPQGPFILAGLLDCPVYLMFCLREQGRYRVHLERFAETLKGPRAGRMERLQQAVYRY
SERLEHYARREPLQWFNFFDFWRDDNQVNRATSAHKTTAALPEQERTTDRTEHL