Protein Info for SO4360 in Shewanella oneidensis MR-1

Annotation: decaheme cytochrome c (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR03508: decaheme c-type cytochrome, DmsE family" amino acids 44 to 298 (255 residues), 305.3 bits, see alignment E=3.4e-95 TIGR01905: doubled CXXCH domain" amino acids 179 to 218 (40 residues), 30 bits, see alignment 3.8e-11 amino acids 226 to 262 (37 residues), 38.7 bits, see alignment 7.4e-14 PF09699: Paired_CXXCH_1" amino acids 179 to 219 (41 residues), 37.6 bits, see alignment 2.9e-13 amino acids 226 to 262 (37 residues), 42.3 bits, see alignment 9.5e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4360)

Predicted SEED Role

"Decaheme cytochrome c MtrA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E9C4 at UniProt or InterPro

Protein Sequence (304 amino acids)

>SO4360 decaheme cytochrome c (NCBI ptt file) (Shewanella oneidensis MR-1)
MKKILLFKLIFISAFCLSSLTIAAENLESLLIKKFEEKQYSKSGADTCLTCHKKDEKVSS
FFNSAHGISNQKGPMAGLQCETCHGPQGKHRGKNEPMITFGEQGNIDINKQNGICLSCHK
NEMQSDWHNAAHQQQACSSCHNIHAEVDPILANAVSQNKVCADCHQAESHQTLMRSSHPL
TNGQMTCTACHGAHGTINDVDLIKNNINQTCYTCHADKRGPLLWEHAPVVDDCTHCHNAH
GSVNDNLLKTRAPLLCQQCHNGNPHAAVDQGIAGTNVFNSSGSCLNCHNQIHGSNHPSGN
KLLK