Protein Info for SO4257 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein TIGR00255 (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 TIGR00255: TIGR00255 family protein" amino acids 1 to 287 (287 residues), 366.6 bits, see alignment E=5.9e-114 PF03755: YicC_N" amino acids 2 to 153 (152 residues), 154.2 bits, see alignment E=3.7e-49 PF08340: DUF1732" amino acids 203 to 287 (85 residues), 110.4 bits, see alignment E=3.4e-36

Best Hits

Swiss-Prot: 61% identical to YICC_ECOLI: UPF0701 protein YicC (yicC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to son:SO_4257)

Predicted SEED Role

"Protein YicC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8E9L3 at UniProt or InterPro

Protein Sequence (287 amino acids)

>SO4257 conserved hypothetical protein TIGR00255 (NCBI ptt file) (Shewanella oneidensis MR-1)
MIQSMTAYARIEHKAQWGTASWEIRSVNQRYLETYLRLPEQFRSFEPVLRDRLRNRLSRG
KVEVNLRYELADNSNNELKLNQGLAKQLLDAASWLKQEAGQGEVNLTDILRWPGVLSSAE
QDMDAIGADLMTAFDLAIDQFIEARGREGAAIKDMLLSRLDGVSEQIAIVREHMPKVMEY
QRDKLTNRLAEIKGELDPARIEQEMILLAQKQDVAEEMDRLEAHVNEARRILKKGGSEGR
RLDFMMQEFNRESNTLASKSISTEITAAAVDLKVLIEQMREQIQNVE