Protein Info for SO4093 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1390 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 1227 to 1241 (15 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 8 to 1278 (1271 residues), 1588.8 bits, see alignment E=0 PF13116: YhdP" amino acids 8 to 1269 (1262 residues), 1104.6 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4093)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EA16 at UniProt or InterPro

Protein Sequence (1390 amino acids)

>SO4093 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MATLFTAKKLSRFCWQLLALILVLFALTVSLIRGLLPQVDEVRQQLVEYVKSEYQINIQV
GELSAQWQAFGPAVTIDDLVIPPQEKLPVTVLVKQVQIKLDFWQSLLTTSPRIEDVNFEG
VHIALDMDKLSGRTTGRVSGQSTQTDWLYILLLKQLERFSLEDASVQLLSLHNEYRPIHI
RHLNWRNSGMQHRGAGEIYLDNNAMVKESLSLQLDITGDATAPDTLKGQIYLAAQSLDLG
EWASRQPNPYDPSKKLPLEGIVNLKAWFDVAHRSIRSGLVQFEPSWLQWSMQGQPQKFEI
QSGSIRWEPKATGWEISSADLDFVTNGEHWPELKLAAKQQDDALYAYVSRVDLPTLFPLL
PLFPGVDLAVLKQWFHLAPEGSVGPIRLYQAADQPLLASTSVTQLHWQKVEGIPNTQPLD
LKLQWQDETLVFSLPEQTYTLDFGDEFSAPLVLQGAELTGAFDTKRATLSMPHVQLANDD
IGLSAALKLDFSTAASMSLAANVAVKNAANADKYFPIKAMGESLAEYLDGAIKAGQSQNA
QVLWQGALSSFPFEDNSGVFQAAFTLNNAEYQFQPDWPAVTDLSLDALFENARMDIWVNQ
GKLMNVVADGAHVFIPELGERSLLKIQADLVTDGSAATKVLQASPLADTVGETLKVVQVQ
GAVAGNLDISIPLYEGEAEDIRGQIVFDNTPVFIAQPGLQLKAVTGTVQFANEVVEGQGI
KSRLFEQPLEFSFATKPEGKDFTLNLDMKSRWDLSRLPQELHNPLSGFYQGKVAWGGNLS
MVFDEQGYQIQANLGSDLVGATLKLPGVFAKPTDEPRPLMAEFSGDQQAAILRVKLDKQA
EFIGGFEAEKGTQFSYFDLLLGRLFEATEVPNTELGHINIDVTSGKLAHWLPVINAFIGT
DNKPVRTGILVEKANHSALFPAVVGIDANIGKFDLLGQGLTDLRLSANPNDNGWRFDAKA
SEFEGTIDFYPNWMTQGLKVAASKFYFSPEVKSEGEADFAADQVLTNLPPVAVNVDDFRF
FDKSFGKLVVQASPQASGYRIQTLSLTTPEVSLQGNGIWQQQNGQNQTELSVSLNASQFH
HLSDQLGINPGVDEAPLKVNADLAWQGAPYAFSLETLNGKVKFELGKGHLSQVSDKGARI
FSLFSLDSLVRKLSLDFSDVFGQGMYFNSFTGNLQIDNGVVKTTDTEMDAIAGNMKVRGY
TDLTTESLNYDIRFVPQLASSVPTVVLLSTSAWTLGLGAFALTKVLEPVIEVISEIRFRV
KGTMSEPVVEELERKSKEIEIPESILPMVGGELPATAEGDKPKADGAAVNKTIPAPQTES
EAKTEQNKVGSKEKIEQPATDIRKPNAEPVSSKAALPIKQIQGESHAHQLVAMSEQSRRQ
CEPVVYRIAA