Protein Info for SO3800 in Shewanella oneidensis MR-1

Annotation: serine protease, subtilase family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1215 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 1191 to 1210 (20 residues), see Phobius details PF00082: Peptidase_S8" amino acids 164 to 568 (405 residues), 126.8 bits, see alignment E=1.1e-40 PF02225: PA" amino acids 383 to 467 (85 residues), 67.4 bits, see alignment 9.7e-23 TIGR03501: GlyGly-CTERM domain" amino acids 1193 to 1213 (21 residues), 20.4 bits, see alignment (E = 3.1e-08)

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3800)

Predicted SEED Role

"Serine protease, subtilase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EAU2 at UniProt or InterPro

Protein Sequence (1215 amino acids)

>SO3800 serine protease, subtilase family (NCBI ptt file) (Shewanella oneidensis MR-1)
MKTKLSLAISAALLTSAAVAGTTAQYNTTNQTTDKYAGLSVTKNDSNEQKQAVAWMVKLK
APSLAQQSQLKGFNKQSVMSQIESSQTKVKNAITSMDADLKIVATTSKLVNSIIVEGNHK
QLVSLLNNAEVADILPIYDYKLDVAASAEYIKAKAVIDAGIASGKGQRVAVLDTGVDYTH
KALGGSGLVADYKAAVAAKSEMPNWPQGKVIGGWDFVNNDPNPIDVTTNHGTHVSHSVVG
TAPDVELLVYSVCNSGCSGIAQLNALEASMDPNGDGDISDRVDTVNMSLGGDFGDVEDGA
VQVMINEMVQLGVNLVISAGNDGPTPFVVGGPSTTNSALSVGAMTHPTTKVGKIEASIAG
NTVTAVGAGFNKSNAYSFTNTVAPIVYPAANKNGCTAYTEDLTGKTVLIDRGTCGFVVKV
LNAQLKGASFVIVANNAANAGAFVMGGTDDKITIPSVMVSKEDGDAIKTALASGDVAFSI
ASTELGTAGAIATFTSRGPSIGGTLKPEITAPGTDILTAHPGLGEGLTPISGTSFSSPIT
AGAVSIIREALPHRNAFEVKATIMNAANLDVTLEPKEINPDTELAPISYIGSGLVDVEKA
INLPVAAWNKDTKQAALAFGLLALNKTTSITKTVTVKNFSATEKTYTLKVDQRFQNDLDS
GALSFALPASVTIPAGQTINFDVTATIDPTKLPEWSLTSSYELDGTAADASAALTLSEYD
GAIQFMEGDVKALHLVYHVLPKAAAAISVETEVTEDGLVRTLTNVGATSITDPFTAPLIA
TSPVDQSKRHDLLNASSELLLSSSCDTGIAIYNTLQMRDPIIHALVASYDVDYDLNNDGV
WDYTAATVNLDWFSTRDNPLPRSIYGLVAKYGTSSGTLEPVFHVTGNNFLTSKVCLEDIG
LAEADLGKTIKVRYRVEDSDWAPIPSGDEDSVVASLVLDGSGTSAMLLDAKGNEVTELKP
GESAILETKVGSNAKGFMFLSDSGSMSVVANTTDEGNSAPTVENLTLSVNKGTAAGSVLG
QLKATDPDMLTSPFSEFVTLSSNSSMVVIAKDGTVRLSDNAVINQQSKTIEVEVIALDTM
GNASTPAKVTVLINNTKPSVTPTNANATENSYVALLANGKDVDGDELTYTWTQTSGPSVS
FVNGKDRIGFTAPAGENVYTFTVVASDGVDNSNVGTSTVTVKTAKSNNGGGTSGGALGWL
TALLLPLAALRRRMK