Protein Info for SO3708 in Shewanella oneidensis MR-1

Annotation: membrane protein, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 58 to 75 (18 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 109 to 126 (18 residues), see Phobius details PF01124: MAPEG" amino acids 4 to 126 (123 residues), 83.7 bits, see alignment E=6.2e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3708)

Predicted SEED Role

"FIG01057269: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EB27 at UniProt or InterPro

Protein Sequence (127 amino acids)

>SO3708 membrane protein, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MNTLLTCLFIAMLLPYLAKGPVAWAMAKAGGYDNHHPRSQQAQLTGFGARALAGHQNAFE
SLLIFGLAVLTVIATGKVTPTAEWLAIVHIVARFAYQILYLLNKGTLRSLSWFVAIFSAF
GIFFQAF