Protein Info for SO3648 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 transmembrane" amino acids 114 to 135 (22 residues), see Phobius details amino acids 140 to 158 (19 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details PF06738: ThrE" amino acids 13 to 248 (236 residues), 234.2 bits, see alignment E=7.9e-74

Best Hits

Swiss-Prot: 48% identical to YJJP_ECOLI: Inner membrane protein YjjP (yjjP) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to son:SO_3648)

Predicted SEED Role

"FIG023911: putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EB84 at UniProt or InterPro

Protein Sequence (253 amino acids)

>SO3648 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MYADTQNDITRQVVRVAQLLLAYGAESDLVEEISQRLGQALGLASVELSISSNSLVLTSL
VHGRCITTTRRIREHGINMTIVCELQRICLLAEKGLYGPNEVRKRLARIEPKTYPPYLVV
LMIGLSCASFCHLFGGDIAASVITFFASAMGMSVRLTIAKRHFNLLVNFAVTAFVTSMIA
QLGYMFSLSDTPQSAMAASVLMLVPGFPMINAISDMVKGHMNVGISRWGHATLLTVSSVI
GITIAMQLGGIFL