Protein Info for SO3301 in Shewanella oneidensis MR-1

Annotation: flavocytochrome c flavin subunit (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF01946: Thi4" amino acids 36 to 83 (48 residues), 27.1 bits, see alignment 7e-10 TIGR01813: flavocytochrome c" amino acids 38 to 491 (454 residues), 583.1 bits, see alignment E=3.4e-179 PF01266: DAO" amino acids 38 to 235 (198 residues), 43.4 bits, see alignment E=1e-14 PF00890: FAD_binding_2" amino acids 38 to 479 (442 residues), 295.1 bits, see alignment E=3.3e-91 PF13450: NAD_binding_8" amino acids 41 to 76 (36 residues), 27 bits, see alignment 1.3e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3301)

Predicted SEED Role

"Flavocytochrome c flavin subunit" in subsystem Flavocytochrome C

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EC43 at UniProt or InterPro

Protein Sequence (499 amino acids)

>SO3301 flavocytochrome c flavin subunit (NCBI ptt file) (Shewanella oneidensis MR-1)
MAGRRDFLKLATGITAAMAFPIKASNDNYGRTWDKEFDIIIIGSGFAGLSAAYSAHKAGI
KNIIVLEKMEAFGGNSAICGGLMCMPLTPMQKKLGIEDSAELMIKDMLKAGRGFNHPELC
RTLATEAHKAYDMLMECGVKFQDKVIRLGGHSAPRAHLPESASGGGIVVPMHNYLRKAGI
IFQNRTNVEEIIRGDSGVTGIVVSEKYDFKSGSNRGQFAYKAKKGVIVASGGWGQDHQFI
KTTMPAYQKLESTAQPGATATMIKSLLSIRALPVMLDMYQLGPWATPDEKGAGPASFFAD
YAFAEGIAIDPKTGARFMNELADRRTRADAQLAVLASGTKEKPNMPFVFCGEATANHAEG
FKAAYRDGAIKKSETLEELAKRYDVDINALQNSINEWNEIVQGKAKDPFNKPLDEKTILK
PPYYSIRLSPKLHYCMGGVAITPNAEVIDSNTCEPISGLFAAGEVTGGTHGMDRLGGCSS
IDGLVFGQIAGNQAAIRKV