Protein Info for SO3224 in Shewanella oneidensis MR-1

Name: fliJ
Annotation: flagellar protein FliJ (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 147 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR02473: flagellar export protein FliJ" amino acids 5 to 144 (140 residues), 127.4 bits, see alignment E=2.7e-41 PF02050: FliJ" amino acids 19 to 142 (124 residues), 117.7 bits, see alignment E=2e-38

Best Hits

KEGG orthology group: K02413, flagellar FliJ protein (inferred from 100% identity to son:SO_3224)

Predicted SEED Role

"Flagellar protein FliJ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECB9 at UniProt or InterPro

Protein Sequence (147 amino acids)

>SO3224 flagellar protein FliJ (NCBI ptt file) (Shewanella oneidensis MR-1)
MANTDPLLLVLKLALDAEEQAALLLKSAQLECQKRQNQLDALNNYRLDYMKQMQSQQGQA
ISASHYHQFHRFIRQIDEAIAQQQRVVADGEKQKNYRQHYWLEKQKKRKAVELLLDNKEK
KRQAIELKKEQKMTDEFASQQFYRRNK