Protein Info for SO3212 in Shewanella oneidensis MR-1

Name: flhF
Annotation: flagellar biosynthetic protein FlhF (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 TIGR03499: flagellar biosynthesis protein FlhF" amino acids 1 to 329 (329 residues), 285.8 bits, see alignment E=3e-89 PF00448: SRP54" amino acids 243 to 432 (190 residues), 132.8 bits, see alignment E=6.5e-43

Best Hits

KEGG orthology group: K02404, flagellar biosynthesis protein FlhF (inferred from 100% identity to son:SO_3212)

Predicted SEED Role

"Flagellar biosynthesis protein FlhF" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECD1 at UniProt or InterPro

Protein Sequence (458 amino acids)

>SO3212 flagellar biosynthetic protein FlhF (NCBI ptt file) (Shewanella oneidensis MR-1)
MKIKRFFAKDMRAALAQVKDTLGSDAVIMSNKKVNGGIEIVAAVDYDEPKAKASAAAPTF
MDVSDDLVSLGGKAPIRAETKLKPSAPADSLQALLEKQQNRLNQQLTHQQQDAELPAWAK
GLQAPAAAKAERRDIANSFDKKPQTSQKQNADLEAMRDELASLRNLLTHQVSALMTEHKK
RIDPVGAMLESKLLEAEFSPAVASKLAALSQHYTPAELVRALPQSLANMLDNQGDDIVKQ
GGVVALVGPTGVGKTTSLAKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCP
VKQAHDLAELEQILYQFRNRKLVLIDTAGMGQRDMRLYQQLDNLTANSRIPIRSYLVLSA
TGQRRVLQDAVNHFKRIPLSGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPEDM
KVADTLMLAEQALAALENTEQQSLPDTAWSDNMTCAFE