Protein Info for SO3182 in Shewanella oneidensis MR-1

Annotation: acetyltransferase, GNAT family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 PF13673: Acetyltransf_10" amino acids 32 to 131 (100 residues), 38.1 bits, see alignment E=2.9e-13 PF00583: Acetyltransf_1" amino acids 34 to 126 (93 residues), 57.8 bits, see alignment E=2.7e-19 PF13508: Acetyltransf_7" amino acids 44 to 127 (84 residues), 40.6 bits, see alignment E=5.5e-14 PF08445: FR47" amino acids 70 to 133 (64 residues), 34.9 bits, see alignment E=2.4e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3182)

Predicted SEED Role

"acetyltransferase, GNAT family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECG0 at UniProt or InterPro

Protein Sequence (142 amino acids)

>SO3182 acetyltransferase, GNAT family (NCBI ptt file) (Shewanella oneidensis MR-1)
MNKIEINPSLIKELLEKVDNEFQPRLSSKVNLTEYACKLNDKAVLFVELDKEILIGLCAV
YMSDRIQLQAYLSMLAVDPEYRGKGFAKKLILDMESTVRDNGFKTIRLEVYKTNEGALSM
YLKLNYIIIDSTENSIFLQKEF