Protein Info for SO3176 in Shewanella oneidensis MR-1

Annotation: glycosyl transferase, group 1 family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 53 to 71 (19 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 13 to 171 (159 residues), 41.4 bits, see alignment E=3.3e-14 PF00534: Glycos_transf_1" amino acids 182 to 344 (163 residues), 105.5 bits, see alignment E=4.6e-34 PF13692: Glyco_trans_1_4" amino acids 196 to 331 (136 residues), 95.2 bits, see alignment E=8.5e-31 PF20706: GT4-conflict" amino acids 199 to 318 (120 residues), 26.1 bits, see alignment E=8.4e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3176)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECG6 at UniProt or InterPro

Protein Sequence (373 amino acids)

>SO3176 glycosyl transferase, group 1 family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MNIIHVIVGLPASGAELFLQRLSFEQRNANYHITVISLTTEGTLGEALRSRGVNVLFLGL
SGVLSVPLVVYKLRKHISNIRPDIIQSWMYHADFFSSLAMFGLNKKLIWSVRCSNIPAGS
YFTLALMKICSLLSYVSPARVCYVAEASKVFHQSQGYSPKKSITIANGYDFSSLVYSEKK
RNSFRESLSLDKHVTVFGLVGRFHKDKGQDILLEAFSKLKADISNYKILLVGRECNNDNH
QLVNLINSYGLDENVILLGEQNDISGLLSAMDIYVMGSRTEGFPNALAEAMSIGLPCIAT
NVGDAALLADKYAVLSEANSNSLADAILAVVKMPVEQRKMLGIHAADHVRKSFSIVEIKK
LYDQLYHSLLEKK