Protein Info for SO3051 in Shewanella oneidensis MR-1

Annotation: hypothetical xanthine dehydrogenase accessory factor (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 transmembrane" amino acids 284 to 300 (17 residues), see Phobius details amino acids 312 to 329 (18 residues), see Phobius details PF02625: XdhC_CoxI" amino acids 17 to 80 (64 residues), 62.2 bits, see alignment E=3.7e-21 PF13478: XdhC_C" amino acids 183 to 320 (138 residues), 87.9 bits, see alignment E=7.9e-29

Best Hits

KEGG orthology group: K07402, xanthine dehydrogenase accessory factor (inferred from 100% identity to son:SO_3051)

Predicted SEED Role

"Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECT1 at UniProt or InterPro

Protein Sequence (337 amino acids)

>SO3051 hypothetical xanthine dehydrogenase accessory factor (NCBI ptt file) (Shewanella oneidensis MR-1)
MDHQMEDLLEHWLPLADDAWVLAVITHIQGSSYRKPGAMMLFHEFGQGAGILSGGCLEAD
LRRHAQNAMLSHQIGCVSYDATDESDASYRLGCGGKVDIMLIPLLKENHDLGLVDIVQAF
RKGQSGFYQLPLVPAGSDARSYSAQFYSSENVPFATADFAKAGVLSQPSGDTLIIPIRPR
FHLGIFGGGIDAKPVAAIAHSLGWQVSVFDSRTAYARTADFPHAHIVKQSPDDAAALIAN
LDCAVVMHHNLTLDAAALKVIQPFALKYVALLGPAHRRDKVLSIAALNVDSFSGFFSAPA
GLALGGELPSAIALSILAQCHGVLHGAAFSTLDGMMP