Protein Info for SO3032 in Shewanella oneidensis MR-1

Annotation: siderophore biosynthesis protein, putative (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 PF04183: IucA_IucC" amino acids 136 to 385 (250 residues), 267.8 bits, see alignment E=8.8e-84 PF06276: FhuF" amino acids 407 to 564 (158 residues), 151.4 bits, see alignment E=3.1e-48

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_3032)

MetaCyc: 90% identical to putrebactin synthetase monomer (Shewanella sp. MR-7)
6.3.2.-; 6.3.2.-

Predicted SEED Role

No annotation

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ECU1 at UniProt or InterPro

Protein Sequence (601 amino acids)

>SO3032 siderophore biosynthesis protein, putative (NCBI ptt file) (Shewanella oneidensis MR-1)
MPAHLTPQHWQAANRHLVKKILCEFTHEKLITPQIYAQGAKVNHYELRLNDCTYYFSACH
YQLDHLDIATDSIRVTSAGTERPLDAMRLIISLKNVLGISETLLPTYLEEITSTLYSKSY
KLAHQAIPAAKLANADYQTIEAGMTEGHPVFIANNGRIGFDMQDYYQFAPESATALKLVW
IAVRKDKTTFSALEGVDHDTLLKQELGEQFTEFQQQLIAQGQTSDAFYFMPVHPWQWREK
IARTFAGEIARGDIIYLGESQDCYQVQQSIRTFFNLSAPQKCYVKTALSILNMGFMRGLS
PLYMSCTPQINAWVANLIESDDYFAEQGFVILKEIAAIGYHHRYYEEALTQDSAYKKMLS
ALWRESPLPHIEPQQTLMTMAALLHIDHQEQALIAELIEHSGLNAKEWVTRYLKLYLSPL
LHAFFAYDLVFMPHGENLILVLDANIPVKILMKDIGEEVAVLNGSEPLPKEVQRLAVELE
EEMKLNYILLDIFDCIFRYLAPILDKQTEVSETQFWELVADNVRDYQTQHPHLADKFAQY
DLFKDSFVRTCLNRIQLNNNQQMIDLADREKNLRFAGGLDNPLAAFRQSHAFGSANMKLK
P