Protein Info for SO2964 in Shewanella oneidensis MR-1

Annotation: ClpP protease family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 100 to 119 (20 residues), see Phobius details amino acids 125 to 143 (19 residues), see Phobius details PF00574: CLP_protease" amino acids 63 to 199 (137 residues), 108.9 bits, see alignment E=1.4e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2964)

Predicted SEED Role

"Prophage Clp protease-like protein" in subsystem cAMP signaling in bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ED07 at UniProt or InterPro

Protein Sequence (284 amino acids)

>SO2964 ClpP protease family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MPFPKSFSQSGVRCDISPRAQELWNPAIKAAVENTESTITVYGIIGEDWYGEGVTLKRID
AALRSIGNEKDVTVYINSPGGDMFEGIAIYNRLREHKGKVTTKVLGLAASAASVIYMAGE
DDARFVASSAFLMIHNCWVFAIGNRHALRNIADDMEEFDAAMVDLYVEGCGQSEKVIATM
MDEETFIRGKKAVELGFAADTLSADEIGETTENTNANSLRKVDAAMAKAGVPRSERRQLL
QDLKSSTPSAAGGITLNADVSDTQNAIAPDLTALINASKIILSK