Protein Info for SO2872 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 36 to 54 (19 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details PF09842: DUF2069" amino acids 10 to 110 (101 residues), 97.3 bits, see alignment E=2.7e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2872)

Predicted SEED Role

"FIG01057991: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8ED90 at UniProt or InterPro

Protein Sequence (124 amino acids)

>SO2872 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MTSNTLLTLSRLGYLALVLLLGGWFIGQGINGEYTLLFSLLWVIPLLLPMKGILKGNPYT
YAWASFILCLYMLHALTLLYVTTDALAFAAIEVLLIGALLIAFPFYARIRGRELGLGLKK
KSDK