Protein Info for SO2842 in Shewanella oneidensis MR-1

Annotation: peptidase, M23/M37 family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 transmembrane" amino acids 28 to 45 (18 residues), see Phobius details PF04225: OapA" amino acids 88 to 166 (79 residues), 31.8 bits, see alignment E=1.9e-11 PF19425: Csd3_N2" amino acids 172 to 295 (124 residues), 101.8 bits, see alignment E=3.9e-33 PF01551: Peptidase_M23" amino acids 307 to 401 (95 residues), 116.4 bits, see alignment E=8e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2842)

Predicted SEED Role

"Cell wall endopeptidase, family M23/M37"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDC0 at UniProt or InterPro

Protein Sequence (434 amino acids)

>SO2842 peptidase, M23/M37 family (NCBI ptt file) (Shewanella oneidensis MR-1)
MKALQTGKPNLANFPQIRLQNLSSAHKNILLVGGLLIGAAMLMPNTNHVVPTAQRIPVAL
DIETILPQVSETVETAPIVDNTPDYERVIASGDTLSALFSKAGVDQQTMYKVLEADLNIL
ALDTLLPGNRIQFWLDNVGQLQKLELYFNAARQVVFTRYDDGSFNVEEINVEGVWQNRIL
TGDIKGSFYVSAQKMGLAAADIQRIEDLLKEKVNFARDLHAGDTFSVLVNDQYVEGEATG
SSQILGVSIKTGRSEISAFQHTDGSYYDAKGRSLVRAFQRIPLAKQPRMSSRFNPARKHP
ITGRISPHNGTDFSVPIGTKVVAPGDGVVSLVTDHQFAGKYIVVEHGGKYRTRYLHLSKA
LVRKGQRVTRGQVIALSGNTGRSTGPHLHYEFHVNGKPVDPMRADIPMANQLANQELRSF
TNMVKSRQALMNLG