Protein Info for SO2781 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 174 PF02620: YceD" amino acids 61 to 172 (112 residues), 55.2 bits, see alignment E=3.7e-19

Best Hits

Swiss-Prot: 42% identical to YCED_ECO57: Large ribosomal RNA subunit accumulation protein YceD (yceD) from Escherichia coli O157:H7

KEGG orthology group: K07040, uncharacterized protein (inferred from 99% identity to shm:Shewmr7_2471)

Predicted SEED Role

"COG1399 protein, clustered with ribosomal protein L32p"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDG8 at UniProt or InterPro

Protein Sequence (174 amino acids)

>SO2781 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MQTVKIPVSIDPIRAASSRSTYEGIVPGQQLKRLNELCAGDCSDVAVSLECGVDLQGIVY
LKGKAVTELTLVCQRCMTLFTTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLH
QLIEDELIVAMPIIPMHEETDCNIGSMDIVVGEIEPAQEERPNPFAVLEKLKSK