Protein Info for SO2742 in Shewanella oneidensis MR-1

Annotation: sensor histidine kinase/response regulator (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1145 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 37 to 58 (22 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 153 to 174 (22 residues), see Phobius details amino acids 187 to 213 (27 residues), see Phobius details amino acids 242 to 258 (17 residues), see Phobius details amino acids 275 to 299 (25 residues), see Phobius details amino acids 319 to 347 (29 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details amino acids 404 to 427 (24 residues), see Phobius details amino acids 434 to 454 (21 residues), see Phobius details amino acids 481 to 500 (20 residues), see Phobius details PF12860: PAS_7" amino acids 629 to 743 (115 residues), 147 bits, see alignment E=4.9e-47 PF00512: HisKA" amino acids 783 to 849 (67 residues), 38.2 bits, see alignment 2.5e-13 PF02518: HATPase_c" amino acids 894 to 1003 (110 residues), 76 bits, see alignment E=6.4e-25 PF00072: Response_reg" amino acids 1026 to 1138 (113 residues), 37.4 bits, see alignment E=5.1e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2742)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDK4 at UniProt or InterPro

Protein Sequence (1145 amino acids)

>SO2742 sensor histidine kinase/response regulator (NCBI ptt file) (Shewanella oneidensis MR-1)
MNLTLVVAVIAICYVSLLFLLAWGAERWFSGVTKKLQVVIYGLSLAVYCSSWSFLGTVGQ
SAKDFWSFIPIFVGPILIFTLGFGMLRKMVLVSKAQNITSVADFIAARYGKSQTLAAIVT
LIAMFGIMPYIALQLKAMVFSLNLFQPADDPLNGVTIALLITALLAIFAILFGTRKLDAT
EHNPGMMLAIAFESLVKLAAFLLVGIVISFGVFDGFGDIWQQASDKSLIHHPNPRIETLM
PELLVGMAAFLCMPRQFHVMVVECADESVLSKGRWLFPLYLALFGLFVGPLALAGKLILG
DSVAADTYVINLPLALDHPLLAVIALLGTLSAATGMVIVAVVTISVMVSNEWLVPVVLRT
GNIREKNFSQFSQMLLNARRLAIVIILGLGYGSYLALADSDSLSHLGMLSFGAFAQLAPA
LVGGLYWKHGNRAGVFLGLSVGFSLWFYIMLSGMTGNQSPAALMSSNIDLLDAITPNVRD
ALTALFANIACYVLGSIWFRAGVAERIQASAFVSPGKLKNNASKKSGPISQQDLLILASR
FVSPTRAYESFSRFSTEAVKSDSWHKAATPELIAHTERLLAGVLGASSASLVMDSVLQGR
DLALDEVFSLVDEASSKIMLSQDMLRGAIEHAYEGMSVIDSDLNLVAWNYKYVELYQYPE
GFLQQGMPISEVIRFNAARGYCGSGAIEQQVEKRVQHMRNGTPHTSERQRKDGKVIKIQG
NPMPDGGFVMTFTDITQYRQQERALLEANETLESRVKERTFELAMLNSELLEAKAQEEMA
NASKSRFLAAVGHDLMQPLNAARLFTASLSQYPNLDREARTTLSHVNSSLKTAGELLTDL
LDISKLDSGMVDVNRRDFAISELLNGLSVEFEAMAADNQIRFKMIPCSATVNSDPSLLRR
VLQNFLTNAYRYARGGRVLFGCRHRGSELEIQVLDTGCGIDEHETHEIFKEFKRLNNPRS
KSVSGLGLGLAIADRISRVLNHGIQVSSQLGRGSVFSITVPLGETVRQPQVKALPSLLQP
LSGIKVLCIDNEEAILAGLESLLSRWQCEVICAKDLADARIKLGLKGVAPDIVLADFHLD
DGQNGVDAMDGIRSLYGKDLPGILITANTRKELVEDVQRRGYHYMAKMIKPAALRALISS
LVKKA