Protein Info for SO2636 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 PF08007: JmjC_2" amino acids 95 to 209 (115 residues), 136 bits, see alignment E=5.5e-44 PF20514: ROXA-like_wH" amino acids 254 to 373 (120 residues), 105.5 bits, see alignment E=1.8e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2636)

Predicted SEED Role

"FIG002776: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDV7 at UniProt or InterPro

Protein Sequence (380 amino acids)

>SO2636 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MYKLNLDIAQFLKDYWQQKPVVIKGAFPHFEDPISADELAGLACEEEITSRIVVTQKDNW
EVIQGPFEDYDNYGETHWQLLVQAVNHWYPDSQPLVEAFRFLPDWRFDDLMVSFATPNGG
VGPHIDNYDVFIIQGEGQRRWTVGDNTPQQCRGGNPNSPLVEDFDPIIDMVLEKGDMLYI
PPGFPHCGETLTLALSYSIGYRAPSQQELVSEVADYLLDKNLGQQRFTSASEPTNPGIIS
QDHQLGIMSLLSQLAQDPASYQVVLGKLLSQNRFELDICEGEEAYSIDDLQDAFEQGAGV
NRIGGLKVLRLEKDAQSRLFINGEIYDLPNTPETMLAQLSDHVSFDCETALALCEHAEVQ
QLLLALINQGLYYLSDEEEA