Protein Info for SO2617 in Shewanella oneidensis MR-1

Name: udk
Annotation: uridine kinase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00235: uridine kinase
  • amino acids 1 to 210 (210 residues), 293.2 bits, E=5e-92
• PF00485: PRK
  • amino acids 8 to 197 (190 residues), 149.9 bits, E=4.1e-48

Best Hits

Swiss-Prot: 100% identical to URK_SHEON: Uridine kinase (udk) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K00876, uridine kinase [EC: 2.7.1.48] (inferred from 100% identity to she:Shewmr4_1657)

MetaCyc: 73% identical to uridine/cytidine kinase (Escherichia coli K-12 substr. MG1655)
Uridine kinase. [EC: 2.7.1.213, 2.7.1.48]; 2.7.1.48 [EC: 2.7.1.213, 2.7.1.48]; 2.7.1.48 [EC: 2.7.1.213, 2.7.1.48]; 2.7.1.48 [EC: 2.7.1.213, 2.7.1.48]

Predicted SEED Role

"Uridine kinase (EC 2.7.1.48) [C1]" (EC 2.7.1.48)

MetaCyc Pathways

• superpathway of pyrimidine ribonucleosides salvage (10/10 steps found)
• pyrimidine ribonucleosides salvage I (3/3 steps found)
• nucleoside and nucleotide degradation (archaea) (4/10 steps found)

KEGG Metabolic Maps

• Drug metabolism - other enzymes
• Pyrimidine metabolism

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.1.213 or 2.7.1.48

Sequence Analysis Tools

See Q8EDX4 at UniProt or InterPro

Protein Sequence (212 amino acids)

>SO2617 uridine kinase (NCBI ptt file) (Shewanella oneidensis MR-1)
MNSQQCVIIAIAGASASGKSLIAKTIFDELRRDLGTDQIGVINEDAYYRDQSHLSMDERV
LTNYDHPKALDHQLLCTHLQLLKSGEAVDIPCYSYTEHTRMAETVKMTPKKVIILEGILL
LTDPKLRELMDASVFMDTPLDICFLRRLTRDVAERGRTMESVISQYKKTVRPMFLQFIEP
SKQYADIIVPRGGKNRIATDILKTRIQHLLAK