Protein Info for SO2597 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 680 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF06980: DUF1302" amino acids 14 to 679 (666 residues), 521.6 bits, see alignment E=1.6e-160

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2597)

Predicted SEED Role

"FIG067310: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDZ3 at UniProt or InterPro

Protein Sequence (680 amino acids)

>SO2597 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKIVKKGFNKSALALGVASALSLLMVSNVNAVAFDWGAVQGSFDSTWTAGASWRVGERDW
AGQIGKVNQPQFDWSNYTAFGNTKYTSAEIWAQPGSYSSNNDLSNLLYSQGDTTSEIVKG
LHELSLKYENYGLFARGMYFYDRKLNDGNYDFNDPLTGKEYDPCQDNRASEVQCKDIRLL
DAFVYANFDLNDGANPLSIRVGNQVVSWGESTLIAHGIGEINPVDLNILNAPGAELKEAF
RPQGMVWASLGITENLSVEAFYQYDWEPIWVPTPGSIFATNDFAGFGGYNQNAQLGFNAN
PDINLDFVMQEYQRLAGMIASGQTIPTQQLVAMALAYPTKVTLVQDEQSPSNDGQYGIKL
GYYAPELGDTEFGFYFMNYHSRRPLISGTAADFSTGALLSDLAVLGQNAGDINRDLLLSL
KSFSKAQIVYPEDIKLYGFSFNTSLGDTSVGAEIAHRQDEPLQIDDVELLFAGMPQQLAN
AGIRPDFNGISQIDGVKPGDTVDGFIRRDTTQAQATFTHLFGPTLGLDNLTMLAEVGGVW
IHDMPGFDELRLNGPGTARSGGNPDMPGIIQALHNGPETNPFPTDFAWGYRLVAKAEFNN
LFAGVNMSPRMIFSHDVDGITPDPMFLFTEGRKSVALGLNFEYQNRWGADLSYNNFFGGV
GTTNAMADRDYISFNIKYSI