Protein Info for SO2497 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 PF17775: YchJ_M-like" amino acids 35 to 135 (101 residues), 90.6 bits, see alignment E=9.7e-30 PF02810: SEC-C" amino acids 145 to 162 (18 residues), 36.8 bits, see alignment (E = 2.9e-13)

Best Hits

Swiss-Prot: 100% identical to Y2497_SHEON: UPF0225 protein SO_2497 (SO_2497) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 100% identity to son:SO_2497)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See P59192 at UniProt or InterPro

Protein Sequence (164 amino acids)

>SO2497 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MTIENHCPCGSQKSYQNCCEALHLNVDSGAQVATSPEQLMRSRYCAFVLKNFDYIIKTHH
VDFLGSLTLEQLKQGPNPNWLALEVLAANEETHPDGTLRGNVTFKAWYKLAGEIDAIYER
SEFVFQQGRWYYTQGQQMHAKRPGRNDPCVCHSGKKFKQCCLTR