Protein Info for SO2469 in Shewanella oneidensis MR-1

Annotation: hypothetical TonB-dependent receptor (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 891 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF07715: Plug" amino acids 55 to 170 (116 residues), 86.1 bits, see alignment E=3.5e-28 PF00593: TonB_dep_Rec_b-barrel" amino acids 425 to 855 (431 residues), 177.3 bits, see alignment E=1.6e-55 PF14905: OMP_b-brl_3" amino acids 655 to 859 (205 residues), 35.4 bits, see alignment E=1e-12

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to son:SO_2469)

Predicted SEED Role

"TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EEB8 at UniProt or InterPro

Protein Sequence (891 amino acids)

>SO2469 hypothetical TonB-dependent receptor (NCBI ptt file) (Shewanella oneidensis MR-1)
MTTQTTVARAVRFSLLALVSTSIAPIAMAAEQGAVDANKVERIAVTGSRIQRTDMETSSP
VTVISRAEIDASGTATVSDFVRNLSQNSFGSFREASGFGSGQSSQSTVSMRGLGSQRTLV
LIDGRRMGSSVAFGGGTQNLNVVPMAAIERIEVLRDGASAVYGSDAVAGVINIITKKEFE
GVEFDADLGATQHGGAEKSNARFTFGVNSEKTNMVASVEYYNRAALYDADRDYSDTLYSA
HGWPGTGSYVDKTKPILDADGKPTGKYQTVSFADKRCGEGNSLVTGPDGNQTCSYNAAAE
SATMAAQERFSTFVKVDHELTEDINWTNRLMMSRVWTEGQYAAAPNSYSPKLRWTKENSD
IYLATVNKYGNDYLKNQLKYDAKGNLIGGDTINLKMRTTPLGPRVTNVEDTDINFLTALE
GHSDILGGTAWNLGAQWIRSDVTTIQTGLANANMIQEFLDNGKLDYFAAGTGYVEGSNEL
QLQEAAHTGIFTGRVQTYGIDGGASFDLFELPAGTVPLAIGFEFMRTEYDKTNDAGSNLG
NIIGTSGGDNIQGKSREVLSFSAETMFPIIDGLDLELSARFDDYSDFGSTFNPKVGLSYR
PVDSLLVRASYGTGFRAPTFDDLYATASETYLWARDWTQCPGNPNGCVQEQFKAQYQGND
DLEPEESTSLSLGLVWNVTDALDFELSYYDIQIDNVISTMSTQDVLNQERDGFDMSNVLF
RDPVTGKIDYVVLQKMNLGELKTSGIDFNIRYLLETSVGEFRFGAETNYVLSWESKDGPY
SELEDIIGDVGQPQFRANLSTTWTQGEWEASLFARYTDSQEDEDYGKTPSQWLLDAQAGY
NLPWNAKVNVGIRNLLDEEPAMNENLGFPGYDTYLYDPIGREYYVRYNQKF