Protein Info for SO2467 in Shewanella oneidensis MR-1

Annotation: adhesion-related protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 PF03797: Autotransporter" amino acids 12 to 108 (97 residues), 31.8 bits, see alignment E=6.4e-12 TIGR01414: outer membrane autotransporter barrel domain" amino acids 23 to 116 (94 residues), 27.1 bits, see alignment E=1.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2467)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (124 amino acids)

>SO2467 adhesion-related protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MQTFNQSVTKAESNVGTESAVSFATSTALTSRIGARLSKTWMNGDEQPDSLWITPSVIHT
RGADSKTCFSTPSQGSVAFRDQLMGTRASLQIGMDGYVTENVSVNARVGGEISLSGDSQS
SYGG