Protein Info for SO2203 in Shewanella oneidensis MR-1

Name: dgkA
Annotation: diacylglycerol kinase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 transmembrane" amino acids 44 to 64 (21 residues), see Phobius details amino acids 69 to 92 (24 residues), see Phobius details amino acids 109 to 133 (25 residues), see Phobius details PF01219: DAGK_prokar" amino acids 29 to 129 (101 residues), 120.3 bits, see alignment E=1.4e-39

Best Hits

Swiss-Prot: 52% identical to KDGL_ECO57: Diacylglycerol kinase (dgkA) from Escherichia coli O157:H7

KEGG orthology group: K00901, diacylglycerol kinase [EC: 2.7.1.107] (inferred from 100% identity to son:SO_2203)

MetaCyc: 52% identical to diacylglycerol kinase (Escherichia coli K-12 substr. MG1655)
Diacylglycerol kinase. [EC: 2.7.1.107]

Predicted SEED Role

"Diacylglycerol kinase (EC 2.7.1.107)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 2.7.1.107)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.1.107

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EF02 at UniProt or InterPro

Protein Sequence (134 amino acids)

>SO2203 diacylglycerol kinase (NCBI ptt file) (Shewanella oneidensis MR-1)
MRTIAQVDGIIMKPANNHGIKRIFRATGFSMKGLKAAWIHEAAFRQELMLAVVMLPVAFL
VDISTMERLMLILTLFIVLIVELLNSAIEAVVDRVGSEIHHLSGQAKDIASAAVFMSLAL
CGITWLVVLLPLLV