Protein Info for SO2177 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 111 to 126 (16 residues), see Phobius details PF04245: NA37" amino acids 9 to 332 (324 residues), 368.6 bits, see alignment E=1.6e-114

Best Hits

Swiss-Prot: 100% identical to NDPA_SHEON: Nucleoid-associated protein SO_2177 (SO_2177) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K06899, nucleoid-associated protein (inferred from 100% identity to son:SO_2177)

Predicted SEED Role

"Nucleoid-associated protein NdpA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EF25 at UniProt or InterPro

Protein Sequence (342 amino acids)

>SO2177 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSINIEQAIIHEISQDSQGQLRCRLRPQPLLNGQAVEMMLEELHQTYTSKSGKGFGYFGI
HGDDGEANPAFANALKEYRAGDLGFVEFTGQASKLLQEELAKYDFSQGGFLLMSCYTSMA
SDYLFVALLSAKSSMTVLDDMELSQNNHLDLNNIQLAARIDLTELQADKDSRKYISFIRG
RAGRKVADFFLDFMGCVEGVNTKAQNKTLMNAVEDFVASSDLTKEERQQCRNKVFEYCSE
RFDEGADIEIKDLADELADQGMESFYDFARGGSYELDEEFPADKSTLRQLKKFSGTGGGV
TISFDGGHLGQRVIYDPISDTILIKGVPANLKDQLDRRLKGE