Protein Info for SO2114 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 618 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF17243: POTRA_TamA_1" amino acids 36 to 107 (72 residues), 69.5 bits, see alignment E=3.2e-23 PF07244: POTRA" amino acids 118 to 193 (76 residues), 31.2 bits, see alignment E=4.4e-11 amino acids 198 to 266 (69 residues), 32 bits, see alignment E=2.6e-11 PF01103: Omp85" amino acids 313 to 617 (305 residues), 128.6 bits, see alignment E=6e-41

Best Hits

KEGG orthology group: K07278, outer membrane protein (inferred from 100% identity to son:SO_2114)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EF72 at UniProt or InterPro

Protein Sequence (618 amino acids)

>SO2114 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MQRFLQITSLSFRLHLLLGLSLLTSVSLAADNVLTLSVNGVDEALKRNILAHLGAMPDSE
VQRRAFLFNVEDNVTTALQSMGYYHGEVEDHLVEKDKGPWELTLTVKAGEPVKIQWVDIN
FSGEMLDDRAFDKWLADVNIKPGDTLNHGMYSDVKSQLVTLALARGYFDGEFTESQIKIN
RDLNTAQISLHFNSGARYHFGQVSFEGHTLEPDILTKLIPFKEDASYSTRRVSALNRQLL
DTGYFSNIKVIPQLDLAKDNQLPVKVELTNKASHSIELGLGGDIGQSSDKTFDPRVRVTW
RTPQINKYGHSQETSLEWSPDRPKFLTTYTIPLTHPLDDQLKIRLGLQRDKYGVTQIYEP
ENRDFRNTGQLESTKYLLGLLRQQRLDNQWLMSYSLDAIREEYTQSDVDYNPSFYLAGIN
FSKTTRGDNSLDPKSGYRQTYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARMD
LAANLANEDELALIPPSLRYFAGGDQTIRGYGYQELGPYLDYIDADGNVNREVIGGRYLM
VGSVEYQYYVTPTWRVATFVDAGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKE
TDTIDRSWRIHLTMGTEL