Protein Info for SO2082 in Shewanella oneidensis MR-1

Annotation: rod shape-determining-related protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 166 PF06723: MreB_Mbl" amino acids 11 to 140 (130 residues), 34.8 bits, see alignment E=4.4e-13

Best Hits

KEGG orthology group: K03569, rod shape-determining protein MreB and related proteins (inferred from 100% identity to son:SO_2082)

Predicted SEED Role

"rod shape-determining-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFA3 at UniProt or InterPro

Protein Sequence (166 amino acids)

>SO2082 rod shape-determining-related protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MFTWLKGLISKDLLIELSEAKITINAFGDKASIEYEPLLALVTEHNKMMIKAIGHEASTL
DGEGIRIVNPFSHPRMFVASFALAEKLLQYGISQLHSSGFRAAPRVILHQLEKTEGGLTD
IEDRVLRELAMGAGAREVVIYLGPRINPQFEHYDDIKRAQLMIKKG