Protein Info for SO2064 in Shewanella oneidensis MR-1

Annotation: conserved domain protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1086 transmembrane" amino acids 48 to 68 (21 residues), see Phobius details PF11739: YdbH-like" amino acids 57 to 1085 (1029 residues), 510.2 bits, see alignment E=9.9e-157

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2064)

Predicted SEED Role

"Putative uncharacterized protein ydbH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFB9 at UniProt or InterPro

Protein Sequence (1086 amino acids)

>SO2064 conserved domain protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MVKTSIPLKKDTVEPALLASSAATSHSQMVETGAPRRRTTIKKRVKQSLIATTLAGMLAG
IALTVWIVNSETETLILRAANYALSGMDSELTDIRLGSMGLEHWQIRSASIRVHDSHLVV
KDLDIQLELNWPKSVAELLQLSQLDVLSQKIKHISTGEIEVELGQSLFERSPSIADEQTP
AIPLNIKSLPLIEIGKTTLSLTAQANHSAYQLVMDKLSLDKHGELTTAFSHEDKPLVSLA
ATLGSDEWTLKSELNIAPLLESLHQISLHQTPTSILSQLIQWDQQWQALGMTLSGQLVSQ
STFKLTTGDIKSDHQFIQPSVTLAHFADFTLAPQPAVAFSVSGSLAALNLTLEPFSLALT
PNAAQQALLLDALNHSLQLNDNDYQTLNTLLSGLKSTQSPIGLAFLMTEPLHYTLAKSDE
PLTLPAVELFTLGSKLETRIRLTNTRLDNAHLTPASDTWTLQTQWHIALQQNTPLNLREL
DLHKRWQDAPQALNWGSSALQTAGVINLKQSAQGIDWQLKTAPISKESTDTLQLTLGDIH
LQNATQASDTQNKQTQLGLGNVQLNAKAPLTVSSTSFSAQDATTAAGSQFALNLPPMSLT
LKQLRFSQTVETLAIDNAHAQHQTQALDHSTKTSLSSRDDITVQDFSLGLSQGVAVNFSS
QDPFLTAIQSSQIKNTLHWQAKQLSIEKQLSAKGRTRKQTVLKLDNLALVQDLHWKNSTL
IGDEQWQVGNVQLQSHHQLQLANANLPLLLTGQWVVDTSMTEALSLLNQTQPLPAELNMT
GHNQLQAQFQLTHQPEQTEFAMQITQSMTELEGFYKDTRFEGGKLQAQCEFTWGQSYKTP
QASGDLSNYFSNLSRLNCPQTIMTFRLFDPGFPFTDIEVNADIVLDRDAEKLPENWLQQL
TGLSDTDVSMTAKGNVLSGQFLLPDFNLKLQDKSHAYLLLQGMDLEEVLRIQPQIGIYAN
GLFDGVLPVDLVDGKVSISGGQLAARAPGGLIAISGNPAVDQMRQSQPYLDFVFSALEHL
AYSQLSSSFDMDNTGDATLLVEVKGRSQGIERPIHLNYSHEENMLQLFRSLQIGNDLQNR
IEKSVK