Protein Info for SO2063 in Shewanella oneidensis MR-1

Annotation: hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 66 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13617: Lipoprotein_19" amino acids 32 to 63 (32 residues), 59.2 bits, see alignment E=1.3e-20

Best Hits

Swiss-Prot: 49% identical to YNBE_SHIFL: Uncharacterized protein YnbE (ynbE) from Shigella flexneri

KEGG orthology group: None (inferred from 100% identity to son:SO_2063)

Predicted SEED Role

"Uncharacterized protein ynbE; probable lipoprotein STY1424"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFC0 at UniProt or InterPro

Protein Sequence (66 amino acids)

>SO2063 hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKIIQLQQVSLGALLLLGTLQGCAPTVKIEPPDKPIVINLNVKIEHEIKIKVDKELDQLL
SDDKLF