Protein Info for SO2062 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 116 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF07027: DUF1318" amino acids 27 to 116 (90 residues), 108.5 bits, see alignment E=9.7e-36

Best Hits

Swiss-Prot: 43% identical to YDBL_ECOLI: Uncharacterized protein YdbL (ydbL) from Escherichia coli (strain K12)

KEGG orthology group: K09978, hypothetical protein (inferred from 100% identity to son:SO_2062)

Predicted SEED Role

"Putative uncharacterized protein ydbL, may be related to amine metabolism"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFC1 at UniProt or InterPro

Protein Sequence (116 amino acids)

>SO2062 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKLVPLKTLRLKPKLLLLLSLGLFSLNVFAMSLQEAKSQGYLGEQPNGYLGLVQNNSDAK
AVMDEVNNKRRAHYETIAKKNNLSAADVAKLAGEKAIAATDKGNYVQNAQGKWVKK