Protein Info for SO2037 in Shewanella oneidensis MR-1

Annotation: site-specific recombinase, phage integrase family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 TIGR02249: integron integrase" amino acids 7 to 319 (313 residues), 396.1 bits, see alignment E=6.3e-123 PF13495: Phage_int_SAM_4" amino acids 8 to 90 (83 residues), 99.9 bits, see alignment E=9.1e-33 PF00589: Phage_integrase" amino acids 106 to 305 (200 residues), 132.9 bits, see alignment E=1e-42

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2037)

Predicted SEED Role

"Integron integrase IntI2" in subsystem Integrons

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFE4 at UniProt or InterPro

Protein Sequence (319 amino acids)

>SO2037 site-specific recombinase, phage integrase family (NCBI ptt file) (Shewanella oneidensis MR-1)
MSLKSPFLSGLQQEMRMRGYSIRTEKTYLYWIKAFINFHGKRHPETMGTEEVAQFLTFLA
NQRNVAINTQKIALNALAYLYQKHLHHELGDLGFCYATKQRYLPTVLSPSEISLILNELD
GRDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILSHRCAEKLTT
YIEKAIKIQQDDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSTSTCINPYTGTLCRHH
LHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQI
YTHVLGQHFAGTTSPLDTL