Protein Info for SO2013 in Shewanella oneidensis MR-1

Name: dnaX
Annotation: DNA polymerase III, gamma and tau subunits (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1002 TIGR02397: DNA polymerase III, subunit gamma and tau" amino acids 3 to 354 (352 residues), 439.1 bits, see alignment E=6.8e-136 PF13177: DNA_pol3_delta2" amino acids 20 to 178 (159 residues), 147 bits, see alignment E=1.8e-46 PF00004: AAA" amino acids 42 to 171 (130 residues), 40.8 bits, see alignment E=1.1e-13 PF12169: DNA_pol3_gamma3" amino acids 232 to 366 (135 residues), 131.4 bits, see alignment E=7.6e-42 PF12170: DNA_pol3_tau_5" amino acids 863 to 980 (118 residues), 103.5 bits, see alignment E=3.7e-33

Best Hits

KEGG orthology group: K02343, DNA polymerase III subunit gamma/tau [EC: 2.7.7.7] (inferred from 100% identity to son:SO_2013)

Predicted SEED Role

"DNA polymerase III subunits gamma and tau (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFG0 at UniProt or InterPro

Protein Sequence (1002 amino acids)

>SO2013 DNA polymerase III, gamma and tau subunits (NCBI ptt file) (Shewanella oneidensis MR-1)
MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK
GLNCETGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF
KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ
QEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQVQSM
LGSIDEQHVLGLLKALTDADIGALMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA
AAQQSLYSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVPE
KSVKRWQVDDAVKVDLSAQPALTPQATIPPEVPAERQLAVNAPVAEKKTLLATVANPEAQ
LQAETTPETALEDDEPELNAALIAEQQVILSQAQSQGFGASADPVVSSNTALNQDVNSSD
PTDPDTALTEQTATEDVLDAQNTAGDLAPEPYVAEAYGQYDYAQSNDAQSNYAQFNHAQS
YDTSTPLDAYQDDYAHFMSEDAAEQLIISEHAVEQLSASEGNLFSNGSAQHSASNQTGQV
FAVDNTQVAKAAVSLEDDDILSAVLAARESLLSDLDALSTKDGDGKKLSPDVKAKTPTSN
AHSRPATSVNVSPRPGQNAVTLEFESDFELPFDDDFEAEIYTKPELSTKATNAPLAPLST
RPITHSIIVPSTQQSAAAQHLPLDPNDRPPWEDAPVAECHHGNAEPITTSRQVNEESHLR
QESAALHAPLLAVEPVQVAPALTLPTNTQAAQVEQAAGQSHQLNHPDEVPATPPRELDAA
APPAPASDLTVAQSITGHPLDLHWYKLMASLDIGGRVRQLAVNSICQVQSNPLPLLLKPD
QKHLAAQVAIEQLEQALTAALGAPRQVEVVIGTDPSRETPLELRKRFHQELLQQARQSLI
MDDNVQWLINRFGAELENDSLLYPPELLNQRSGLIPALPEPE