Protein Info for SO1911 in Shewanella oneidensis MR-1

Annotation: oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 PF00106: adh_short" amino acids 30 to 185 (156 residues), 116.8 bits, see alignment E=1.4e-37 PF08659: KR" amino acids 36 to 164 (129 residues), 43.5 bits, see alignment E=5.2e-15 PF13561: adh_short_C2" amino acids 39 to 181 (143 residues), 96.4 bits, see alignment E=3e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1911)

Predicted SEED Role

"Oxidoreductase, short chain dehydrogenase/reductase family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFQ8 at UniProt or InterPro

Protein Sequence (287 amino acids)

>SO1911 oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file) (Shewanella oneidensis MR-1)
MLAERGAKVVLIDQPNSPAKRQQYSEGDFSNSELCQTYETILKLGADCLCFEVDVSQQTD
IKTMLNSLMQRWQCIDILINNAGIYGACPFEHIQAADWQRQFEVDVNGSFYLTQAIWPVM
KAQGYGRILMTTGVSALFGDLHQVAFSAAKMALVGMVNSLSIEGEQYNIHVNSLCPQALT
DMTRKHLAPAIQPLFSFDTLTATVAFLVSSKAPNGQHLLAGAGSVSHGRFAEFQSIYFSE
GQCTPDKLIKYWPELYYAFPVNLHSCGEDKVLAWSKQSALEHHIKIE