Protein Info for SO1899 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF20142: Scaffold" amino acids 64 to 205 (142 residues), 91.8 bits, see alignment E=9.7e-30 PF01471: PG_binding_1" amino acids 235 to 298 (64 residues), 35.4 bits, see alignment E=1.5e-12 PF03734: YkuD" amino acids 326 to 490 (165 residues), 92.8 bits, see alignment E=4.7e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1899)

Predicted SEED Role

"Peptidoglycan-binding domain 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFR7 at UniProt or InterPro

Protein Sequence (571 amino acids)

>SO1899 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MVFSRKEILIMRRIHHFTLGLLLLLSPVSTACWASTPQLEALLEPLSLGERAKVDNTQII
SAKLLSRVYQVRHYQALWEDKDYAGTMLDVIKRADEEGLAKEDYHYPKLVELYQQLSASN
WQDEYKSSIFEVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDEAHLDFDTTLKQLEEHIK
AHTVAEAINGLAPKITPYHQLKQYLAHYKDLAARYPFTTIPYTEVIKPGTTSPSIKGIAA
RLKEQGYLDANATVQDATLVANAPLLYDNILEAAIRQFQADHSLKADGVIGAGTMAALNV
PYAQRVEQIRINLERARWLSANLSANYLIVNLAGYELLLFKDNNLSWRTDIIIGKIDSKT
PLFKSKLKYVVVNPTWTVPNSISTEIINHQRKDPDYLHKKHFKVVESSGTPVDASGIDWH
SMTRKNFPYWFVQEPGADNSLGLVKFIFPNQYSIYLHDTPSKNLFDKTDRAFSHGCIRVK
DPLVLADKLLSANANWSSETLNNKLAEGKTENLFLDEPLDILIMYWTATIKNGKIKFYND
VYTRDPVLIEALNRPTYEGVLADDGLLNTLD