Protein Info for SO1867 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 transmembrane" amino acids 91 to 107 (17 residues), see Phobius details PF04337: DUF480" amino acids 3 to 155 (153 residues), 224.3 bits, see alignment E=3.5e-71

Best Hits

Swiss-Prot: 100% identical to Y1867_SHEON: UPF0502 protein SO_1867 (SO_1867) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K09915, hypothetical protein (inferred from 100% identity to son:SO_1867)

Predicted SEED Role

"Protein of unknown function YceH" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EFU8 at UniProt or InterPro

Protein Sequence (222 amino acids)

>SO1867 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MELTLHEARVIGCLLEKEVTTPEQYPLSLNALTLACNQKTSREPVLELTEAQVQDALDSL
NKKRLISEQSGFGSRVVKYKHRFCNTEFSELQLSTAAVAIVCLLLLRGPQTPGELRTRSN
RLHDFKDVLEVEACIKQLMERDKPVLTQLPREPGKRECRYTELFSQGSEQVSATSLSADS
PSADSNSLNAQDRQQLEARVTQLEGQVAELKDKLESLIASLS