Protein Info for SO1811 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 98 to 117 (20 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 240 to 259 (20 residues), see Phobius details TIGR01620: TIGR01620 family protein" amino acids 101 to 367 (267 residues), 228.2 bits, see alignment E=6.3e-72 PF05128: DUF697" amino acids 209 to 367 (159 residues), 190.1 bits, see alignment E=1.2e-60

Best Hits

Swiss-Prot: 100% identical to Y1811_SHEON: UPF0283 membrane protein SO_1811 (SO_1811) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K08990, putative membrane protein (inferred from 100% identity to son:SO_1811)

Predicted SEED Role

"Membrane protein YcjF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EG03 at UniProt or InterPro

Protein Sequence (401 amino acids)

>SO1811 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MSVELLPHSTEPHANGADKSVSAAARVTQSLKKQQVFDAEQVKLQSATDELKSAQMFAPQ
TPITAIDDVVDEALAAHPQALDVESIRPKLHQSRRWSWLARLSLMALLLLTLVQTVLGLR
DAWLESPWLFSFYGAVLGIVGSWAIVGVIGEYRKLKRLKQVADTQETGARLALSMQMGEA
DGFIDNIVRHYPDSQGLQRLRHSLKDEHNDAEKVLLFEDLVLTERDELAKKIVRRYAAES
AVLLAASPLAVLDMAIILWRNQRMLRDVAACYGIELGYWSRIKLIRSIVINIIYAGTSEL
VTDLGTQLLSVEMTGKLSARLAQGLGGGLLTARLGYQAMALCRPIRFKDEQRPKLTKVHQ
ELLMELKQFAGNLLTKDGRDALKTQLEGTEVNTSSKEKSLS