Protein Info for SO1760 in Shewanella oneidensis MR-1

Annotation: AzlC family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 34 to 70 (37 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 113 to 137 (25 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 168 to 207 (40 residues), see Phobius details PF03591: AzlC" amino acids 2 to 140 (139 residues), 130.6 bits, see alignment E=2.8e-42

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1760)

Predicted SEED Role

"FIG006238: AzlC family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EG49 at UniProt or InterPro

Protein Sequence (230 amino acids)

>SO1760 AzlC family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MPLTIAVVPWGILAGSFAIEVGLSPLESQAMSAIIFAGAAQLVALGMVKAGIGLWSILIT
TLLITSRHLLYAMAMRSQISPLPLAWRLTLGFLLTDELFAIANPGKLHKFDPWYALGGGL
SFYLGWNLATLIGIVAGNAIDNLGELGLDFAIAATFIALVVPTVKKPSILVCVMVSLTLA
VVCAVLDIQAGLLIAALSGMTAGVLYAKVTQENKHAKNTETVTTQPEETL