Protein Info for SO1732 in Shewanella oneidensis MR-1

Annotation: cold shock domain family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 transmembrane" amino acids 200 to 222 (23 residues), see Phobius details PF00313: CSD" amino acids 1 to 64 (64 residues), 34.7 bits, see alignment E=6.3e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_1732)

Predicted SEED Role

"cold shock domain family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EG75 at UniProt or InterPro

Protein Sequence (224 amino acids)

>SO1732 cold shock domain family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MKGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTPKGLAA
KAISLPEVFIRERLVDFFTTRDNRPKNGTVIASFPIATRFFKDPSEGRRHLEQLAKHCGC
NAVLNVSFEKDTFSKGNYRYTVHAFKGELALVTEKVPADAQELVVASAELLEKRKADVEQ
AVKQMSEAENLARQKQLSGCLGTLAIITLIPLALVLTAIAVFPA